The Good, the Bad and the Ugly: when statistics tells you to throw away peptide IDs

Separating the Wheat from the Chaff: Prediction-Assisted Rescoring of Peptidic Fragment Ion Spectra Siegfried Gessulat1, Tobias Schmidt2, Michael Graber1, Florian Seefried1, Carmen Paschke3, Kai Fritzemeier3, Dave Horn4, Bernard Delanghe3, Daniel Zolg2, Mathias Wilhelm2, Bernhard Kuster2, Martin Frejno1 1msAid GmbH, Garching,…

CHIMERYS: An AI-Driven Leap Forward in Peptide Identification Martin Frejno1; Daniel P Zolg1; Tobias Schmidt1; Siegfried Gessulat1; Michael Graber1; Florian Seefried1; Magnus Rathke-Kuhnert1; Samia Ben Fredj1; Shyamnath Premnadh1; Patroklos Samaras1, Kai Fritzemeier2; Frank Berg2; Waqas Nasir2; David Horn3; Bernard Delanghe2;…

Implementing Comet search engine into Proteome Discoverer to improve TMT Real-Time Search data processing 1 Yang Liu, 2Frank Berg, 1 William D. Barshop, 1Jesse D. Canterbury, 1David Horn, 1David Bergen, 1Romain Huguet, 1Rosa Viner 1Thermo Fisher Scientific, San Jose, CA,…

CHIMERYS: An AI-Driven Leap Forward in Peptide Identification Martin Frejno1; Daniel P Zolg1; Tobias Schmidt1; Siegfried Gessulat1; Michael Graber1; Florian Seefried1; Magnus Rathke-Kuhnert1; Samia Ben Fredj1; Shyamnath Premnadh1; Kai Fritzemeier2; Frank Berg2; Waqas Nasir2; David Horn3; Bernard Delanghe2; Christoph Henrich2;…