Automated and faster library-free dia-PASEF analysis with a Spectronaut integrated workflow in ProteoScape

ASMS 2022 – ThP 454 Enhanced Sensitivity and Reproducibility for HLA-Class I & II Immunopeptidomics Utilizing dia-PASEF Workflow Diego M Assis1; Nicholas Cheung2; Jonathan R Krieger3; Daniel Hornburg4; Michael Krawitzky4; Matthew Willetts5; Robert Salzler2 1Bruker Scientific LLC, Billerica, MA; 2Regeneron,…

High throughput proteomics – Application of dia-PASEF and Evosep One for short gradients ASMS 2020, MP122 Stephanie Kaspar-Schoenefeld1, Markus Lubeck1, Thomas Kosinski1, Scarlet Koch1, Oliver Raether1, Gary Kruppa1 1Bruker Daltonik GmbH, 28359 Bremen, Germany Introduction Data-independent acquisition (DIA) promises reproducible…

High throughput 4D-Proteomics – Application of dia-PASEF® and the Evosep One for short gradients The timsTOF Pro offers a combination of two unique technologies, namely a 4th dimension provided by Trapped Ion Mobility Spectrometry (TIMS) to enhance ion separation and…

Comparison of different processing pipelines for dia-PASEF® data MP 248 (2019) 1 Celine Henry2, Aaron Manuel Chapelle Millan-Oropeza2, Pierre-Olivier Schmit1 and Stephanie Kaspar3 1 Bruker France S.A., Wissembourg, France 2 Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, PAPPSO, Jouy-en-Josas, France. 3Bruker…