TIMSrescore: timsTOF-optimized PSM rescoring boosts identification rates for immunopeptidomics

US HUPO 2024, ABSTRACT 651 A CCS-centric HLA-specific trained de novo module for precise and accurate real-time immunopeptide identification on the Bruker ProteoScape platform Rui Zhang1; Qixin Liu1; Mingjie Xie1; Dennis Trede2; Tharan Srikumar3; Jonathan Krieger3; Bin Ma1; George Rosenberger4…

ASMS 2023 Precise and accurate real-time de novo sequencing of timsTOF data with the Novor algorithm on the Bruker ProteoScape™ platform The results suggest even greater performance improvements of BPS Novor for challenging immunopeptidomic applications, where typically a lower fraction…

Separating the Wheat from the Chaff: Prediction-Assisted Rescoring of Peptidic Fragment Ion Spectra Siegfried Gessulat1, Tobias Schmidt2, Michael Graber1, Florian Seefried1, Carmen Paschke3, Kai Fritzemeier3, Dave Horn4, Bernard Delanghe3, Daniel Zolg2, Mathias Wilhelm2, Bernhard Kuster2, Martin Frejno1 1msAid GmbH, Garching,…

The intelligent protein informatics platform Thermo Scientific Proteome Discoverer software Transform proteomics mass spectrometry data into insights Thermo Scientific™ Proteome Discoverer™ software enables comprehensive proteomics data processing workflows empowered by artificial intelligence. • Powerful and flexible framework: Optimized analysis for…