TwinScape: a digital twin-driven concept for improved timsTOF platform monitoring and data quality assurance

ASMS 2023 - THP 378 Real-time de novo sequencing of peptide antigens using Bruker ProteoScape™ for 'Run & Done' 4D-immunopeptidomics A 5000 4500 4000 3500 3000 2500 2000 1500 1000 500 0 1Monash University, Clayton, Australia, 2Rapid Novor Inc., Kitchener,…

ASMS 2023 Precise and accurate real-time de novo sequencing of timsTOF data with the Novor algorithm on the Bruker ProteoScape™ platform The results suggest even greater performance improvements of BPS Novor for challenging immunopeptidomic applications, where typically a lower fraction…

US HUPO 2024, ABSTRACT 651 A CCS-centric HLA-specific trained de novo module for precise and accurate real-time immunopeptide identification on the Bruker ProteoScape platform Rui Zhang1; Qixin Liu1; Mingjie Xie1; Dennis Trede2; Tharan Srikumar3; Jonathan Krieger3; Bin Ma1; George Rosenberger4…

ASMS 2025 timsplot: A Python Shiny App for Visualizing timsTOF Proteomics Results Zachary J. Kirsch1, Manubhai Kadayil Prabhakaran1, Diego Assis1, Ruben Shrestha2, and Matthew Willetts1 1Bruker Scientific, Billerica, MA, 2Bruker Scientific, San Jose, CA Introduction The timsTOF platform has garnered…