New strategies for non-targeted quantification in comprehensive two-dimensional gas chromatography: The potential of reconstructed TIC response factor surfaces

Assessment of LC-QTOF-MS data independent acquisition for quantification and suspect screening of pesticides in agriculture impacted water samples

<p><strong>Our Library never stops expanding. What are the most recent contributions to LabRulezGCMS Library in the week of 18th August 2025? Check out new documents from the field of the gas phase, especially GC and GC/MS techniques!</strong></p><blockquote><p><span style="font-size:20px;">👉 </span><a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/library"><span style="font-size:20px;"><strong>SEARCH THE LARGEST REPOSITORY OF DOCUMENTS ABOUT GCMS AND RELATED TECHNIQUES</strong></span></a></p></blockquote><blockquote><p><strong>👉 Need info about different analytical techniques?</strong> Peek into <a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/library"><strong>LabRulezLCMS</strong></a> or <a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/library"><strong>LabRulezICPMS</strong></a> libraries.</p></blockquote><p>This week we bring you poster by <strong>Agilent Technologies / ASMS </strong>and application note<strong> </strong>by<strong> Shimadzu!</strong></p><h3><strong>1. Agilent Technologies / ASMS: New Pollutant Screening of Environmental Samples Using High-Resolution GC/Q-TOF and Accurate Mass Spectral Library of Emerging Environmental Pollutants&nbsp;</strong></h3><ul><li>Poster</li><li><a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/labrulez-bucket-strapi-h3hsga3/ps_7250_pdcl_library_pal3_suremass_asms_2025_thp_083_en_agilent_3f1ac53d50.pdf"><strong>Full PDF for download</strong></a></li></ul><p>This paper conducts qualitative and semi - quantitative analysis of complex GC/Q-TOF sample data by using high-resolution, accurate-mass gas chromatography/quadrupole time-of-flight mass spectrometry (GC/Q-TOF), an accurate mass spectral library of environmental pollutants specifically created for emerging pollutant screening, and analytical software with a screening process platform. Actual environmental water samples are used to verify the sensitivity, accuracy, and spiked recovery rate of the solution. All results confirm that this solution is simple, stable, and effective, providing technical support for emerging pollutant screening.</p><h4><strong>Experimental</strong></h4><h5><strong>Instrument Analysis&nbsp;</strong></h5><p>The samples were analyzed by <a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/library?mainauthorItems=10&amp;search=8890+GC"><strong>Agilent 8890 GC</strong></a> and <a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/library?mainauthorItems=10&amp;search=7250+GC%2FQ-TOF"><strong>7250 high resolution accurate mass GC/Q-TOF system</strong></a>, It was configurated with a mid-column backflush setup (Figure 1). A 55.5 - min retention time locked GC oven temperature program is utilized which is listed in Table 1. The key mass spectrometry parameters of the GC/Q-TOF are as follows: It operates in the Electron Ionization (EI) mode with an energy of 70 electron volts, conducts detection in the time-of-flight scan mode within a mass-to-charge ratio range of 50 - 1000. The spectral acquisition rate is 5 Hz, and both the interface temperature and the source temperature are set at 280 °C. Data analysis is performed with the assistance of MassHunter data analysis software. The high-resolution accurate mass spectral library employed in the screening process is independently created by the laboratory.</p><h5><strong>Data Analysis&nbsp;</strong></h5><ul><li>The data processing used Agilent <a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/library?mainauthorItems=10&amp;search=Masshunter+software"><strong>Masshunter data analysis software</strong></a>, including Suremass.&nbsp;</li><li>The target screening of new pollutants was based on an independently created by the laboratory GC/Q-TOF PCDL library<sup>1</sup>.</li></ul><h4><strong>Conclusions&nbsp;</strong></h4><ul><li>Based on the currently collected list of new pollutants, a truly meaningful new pollutant PCDL high-resolution spectral library has been created.&nbsp;</li><li>This work demonstrated a total workflow for targeted screening and semi-quantification in real water sample.&nbsp;</li><li>The confidence in identification of new pollutants was enhanced by stable RT and excellent mass accuracy as a result of using an RTL backflush method and highresolution accurate mass measurement.</li></ul><h3><strong>2. Shimadzu: Analysis of SAF Using Comprehensive Two- Dimensional Gas Chromatography (GC× GC)&nbsp;</strong></h3><ul><li>Application note</li><li><a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/labrulez-bucket-strapi-h3hsga3/an_01_00862_en_f1ee0a435f.pdf"><strong>Full PDF for download</strong></a></li></ul><h4><strong>User Benefits</strong></h4><ul><li>By comparing chromatograms obtained as two-dimensional images, it can be utilized for quality control Inspection of SAF.</li><li>Changing the column combination customizes separation characteristics to the sample composition.</li><li>Utilizing the FASST (Fast Automated Scan/SIM Type) allows for the simultaneous analysis of the composition of SAF and the quantitative analysis of antioxidants.</li></ul><p>SAF (Sustainable Aviation Fuel) produced from waste cooking oil, used paper, and sugarcane has gained attention in recent years from the perspective of achieving a carbon neutral society. The physical properties of SAF,such as combustibility, vary depending on its components. Therefore, component analysis of SAF is crucial; however, since SAF is a mixture of various hydrocarbons, complete separation of each component is extremely challenging. Comprehensive two-dimensional gas chromatography (GC×GC), which utilizes the separation characteristics of two different types of columns, is an effective method for analyzing SAF with such a complex composition. Additionally, the GCMS-QP2050 enables ultra-fast scanning (30,000 u/sec), which improves the separation of adjacent peaks and allows for high-precision qualitative analysis(Application News No.01-00788-EN).</p><p>In this application, two types of SAF (A and B) and one intermediate product from the SAF production process (C) were measured using a combination of GC×GC with a non-polar column as the first column and a medium-polarity column as the second column. The two-dimensional images allow for a visual representation of the composition distribution, making quality control Inspection. Moreover, high separation of paraffins and naphthenes using a combination of a medium-polar column as the first column and a non-polar column asthe second column, as well as the quantification of antioxidants in SAF, which are regulated by concentration in ASTM D2425 will be introduced.</p><h5><strong>System Configuration</strong></h5><ul><li><strong>GC Model</strong>: <a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/library?mainauthorItems=1&amp;search=Nexis%E2%84%A2+GC-2030"><strong>Nexis GC-2030</strong></a> / <a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/library?mainauthorItems=1&amp;search=AOC-30i"><strong>AOC-30i</strong></a></li><li><strong>MS Model</strong>: <a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/library?mainauthorItems=1&amp;search=GCMS-QP2050"><strong>GCMS-QP2050</strong></a> (TMP exhaust: 255 L/sec)</li><li><strong>Injection Port</strong>: SPL</li><li><strong>Modulator: </strong>ZX1 thermal modulator (ZOEX corp.)</li><li><strong>Nitrogen generator: </strong>MT-24F (System Instruments Co., Ltd.)</li><li><strong>Software</strong>:<ul><li><a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/library?mainauthorItems=1&amp;search=Labsolutions+GCMS"><strong>Labsolutions<sup>TM</sup> GCMS</strong></a></li><li>GC Image (GC Image, LLC)</li></ul></li><li><strong>Library: </strong>NIST Mass Spectral Library</li></ul><h4><strong>Conclusion</strong></h4><p>Three SAF samples were measured using a combination of lowpolar to medium polar columns and compared the twodimensional images. The two-dimensional images allow for intuitive comprehension of the distribution of each component, making it easy to identify differences in composition and conducting quality control Inspection. Additionally, in the measurement of SAF using a combination of medium-polar to non-polar columns, the separation of paraffins and naphthenes was improved. Furthermore, by utilizing the FASST, composition analysis of SAF and quantitative analysis of antioxidants were simultaneously performed, which are regulated by concentration in ASTM D2425.</p>

News from LabRulezGCMS Library - Week 34, 2025

Effect of Multispecies Swards on the Fat Composition and Oxidative Stability of Milk from Dairy Cows in Mid-Late Lactation

<p><strong>Our Library never stops expanding. What are the most recent contributions to LabRulezGCMS Library in the week of 10th November 2025? Check out new documents from the field of the gas phase, especially GC and GC/MS techniques!</strong></p><blockquote><p><span style="font-size:20px;">👉 </span><a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/library"><span style="font-size:20px;"><strong>SEARCH THE LARGEST REPOSITORY OF DOCUMENTS ABOUT GCMS AND RELATED TECHNIQUES</strong></span></a></p></blockquote><blockquote><p><strong>👉 Need info about different analytical techniques?</strong> Peek into <a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/library"><strong>LabRulezLCMS</strong></a> or <a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/library"><strong>LabRulezICPMS</strong></a> libraries.</p></blockquote><p>This week we bring you applicaton notes by <strong>Agilent Technologies, EST Analytical </strong>and <strong>Shimadzu!</strong></p><h3><strong>1. Agilent Technologies: Improved Thermal Stability Leads to Retention Time Stability and Data Accuracy for the Analysis of Pesticides</strong></h3><ul><li>Application note</li><li><a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/labrulez-bucket-strapi-h3hsga3/an_pesticide_gc_ms_5994_8447en_agilent_773f1f135b.pdf"><strong>Full PDF for download</strong></a></li></ul><p>The analysis of trace-level pesticides is required by many governmental regulatory authorities at varying concentrations and can include hundreds of target analytes. As many of the matrices tested are complex and the analytes active, a robust and inert gas chromatography method is required.<sup>1</sup> Heavy matrices can be difficult for analytical gas chromatography columns, and higher temperatures may be required to elute the matrix off of the column. To avoid damage from high temperatures and heavy matrix, a thermally stable and ultra inert analytical column phase is needed to successfully perform this analysis. The Agilent J&amp;W 5Q series of gas chromatography columns provide the most thermally stable column available and offer inertness for difficult analytes.<sup>2</sup> The increased thermal stability not only dramatically reduces column bleed but also allows for less spectral interference at higher temperatures, leading to less need for background subtraction when searching analyte spectra against commercially available libraries.&nbsp;</p><p>While column bleed is a normal phenomenon, the increase of the baseline due to column bleed is an indication of the column phase breaking down and leading to retention time shifts. Retention time shifting can be especially difficult with the analysis of pesticides, since sensitive detectors such as mass spectrometers and triple quadrupole systems collected in selected ion mode (SIM) or multiple reaction monitoring (MRM) mode are required to achieve lower limits of detection. In both SIM and MRM collection methods, time segment windows are stated for analytes of interest, and if a retention time shifts earlier, it can move out of the collection window and require time to update the analytical collection method. By using a GC column with increased thermal stability, such as the Agilent J&amp;W DB-5Q or the Agilent J&amp;W HP-5Q, the column will be more robust to thermal and matrix damage. These columns will also maintain consistent retention times over long periods of analytical stress.&nbsp;</p><p>Retention time locking is a useful tool in the analysis of pesticides, as it can adjust column flow or pressure to normalize retention times, so that the retention times of the analytes are the same from system to system or column to column.<sup>3,4</sup> When columns with identical selectivity are interchanged, after a single injection of a test mix, the analysis can be relocked and the column flow adjusted, based on the initial calibration, to be identical as in the original method. This eliminates the need to constantly update retention times in analytical methods for SIM or MRM windows or data processing methods when replacing analytical columns.&nbsp;</p><p>When analyzing pesticides in heavy matrix, a guard column can serve two additional benefits. The guard column can help protect the analytical column from heavy matrix damage and can improve solvent and sample focusing. It is recommended to use nonpolar solvents when working with nonpolar column phases, such as the DB-5Q and HP-5Q columns. Recently it has become more common to prepare heavy matrices for pesticide analysis using QuEChERs-type preparations, with a final solvent of acetonitrile. Solvent-column phase polarity mismatch can lead to improper solvent focusing and wettability leading to improper peak shape, especially when working with columns that have low free silanol content on the deactivated surface of the fused silica. Use of a guard column can help to refocus the solvent and analytes to maintain proper peak shape.<sup>5</sup>&nbsp;</p><p>The Agilent 7010D GC/TQ uses the new Agilent High Efficiency Source (HES) 2.0 equipped with a novel dipolar RF lens that redirects carrier gas and low mass ions by &gt;&nbsp;95%, helping to reduce noise and extend instrument robustness while maintaining sensitivity.<sup>6</sup> When using DB-5Q and HP‑5Q columns in conjunction with the HES 2.0, it is possible to increase the overall robustness of the workflow for the analysis of pesticides over a wide dynamic range of analyte&nbsp;concentrations.&nbsp;</p><h4><strong>Experimental&nbsp;</strong></h4><p>An <a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/library?mainauthorItems=10&amp;search=8890"><strong>Agilent 8890 GC</strong></a> coupled with an <a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/library?mainauthorItems=10&amp;search=5977B"><strong>Agilent 5977B GC/MSD</strong></a> with an Inert Extractor Source was used for acquisition of data and <a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/library?mainauthorItems=10&amp;search=MassHunter+10.0+Qualitative+Analysis"><strong>MassHunter 10.0 Qualitative Analysis software</strong></a> was used for data analysis. NIST20 library was used to confirm peak identification. A retention gap of one meter was used as a guard column to help protect the analytical column from heavy matrix and to aid in solvent focusing.</p><h4><strong>Results and discussion&nbsp;</strong></h4><p>The analysis of pesticides requires retention time stability as well as consistency from analytical column to analytical column. To compare the analytical performance of an Agilent J&amp;W DB-5Q to an Agilent J&amp;W DB-5ms UI GC column for the analysis of pesticides, a standard was first analyzed on a DB-5ms UI and the retention time locked for chlorpyrifosmethyl. The DB-5ms UI column was then replaced with a DB-5Q, and once the column was conditioned, the representative pesticide mix was again analyzed and relocked to the appropriate retention time for chlorpyrifos-methyl and analyzed again. Figure 1 demonstrates the identical selectivity of the DB-5ms UI to the DB-5Q phases and the ability to relock an existing analytical method when upgrading columns and compatibility with existing retention time locking libraries.&nbsp;</p><p>Additionally, when comparing the baseline of the DB-5Q to the DB-5ms UI column at the upper temperature limit of the chromatographic method, the increased thermal stability of the DB-5Q allows for a significant decrease in column bleed at upper temperature limits (Figure 1).</p><h4><strong>Conclusion&nbsp;</strong></h4><p>This application note demonstrated that the Agilent J&amp;W DB-5Q column has identical selectivity to the Agilent J&amp;W DB-5ms UI column, allowing for seamless adoption and use with existing retention time locking methods. The robust DB-5Q column phase maintained retention time stability even when analyzing heavy matrices and temperature cycling. The increased thermal stability not only decreased the baseline at higher temperatures but also allowed for less spectral interference and high library match factor scores. The analytical performance of the Agilent J&amp;W DB-5Q column coupled with the Agilent 7010D with the HES 2.0 ion source allows for optimal sensitivity and wide dynamic range of pesticide compounds.</p><h3><strong>2. EST Analytical: Automated Sampling of Methanol Extractions</strong></h3><ul><li>Application note</li><li><a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/labrulez-bucket-strapi-h3hsga3/Purge_and_Trap_Automated_Sampling_of_Methanol_Extractions_f521577cc4.pdf"><strong>Full PDF for download</strong></a></li></ul><p>Environmental labs are required to perform methanol extractions on highly contaminated solid waste samples. Additionally, these extractions are used for difficult matrices, for example oily waste samples, that are also soluble in methanol. Due to the variety of matrices that can be extracted with methanol there are assorted hurdles to cross in order to automate the sampling process. One of these obstacles is how the matrix can absorb the extraction solvent. For example, many soil samples require more methanol; due to the soil expanding with the solvent addition. Adding more methanol aids in rectifying this issue however, when automating sampling, the added methanol coupled with the soil expansion needs to be accommodated. For this reason, EST Analytical created software for the Centurion WS that allows the user to program the needle depth to different distances. In doing this, laboratories are able to sample soils at higher depths in order to adjust for sample absorption and at lower depths for samples that do not require the added solvent. In order to test volatile compounds in methanol extractions, a portion of the extract needs to be sampled from the vial, diluted, and purged on a purge and trap concentrator. This examination will look at the automated sampling of three different soil matrices.&nbsp;</p><h4><strong>Experimental:&nbsp;</strong></h4><p>The <a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/products/2159"><strong>Centurion WS autosampler</strong></a> with the syringe option and the <a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/products/2160"><strong>Evolution purge and trap concentrator</strong></a> were set up to run methanol extractions. Since this is a volatile analysis, a Vocarb 3000 (K) trap was used for the analytical trap. The sampling system was configured to an <a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/library?mainauthorItems=1-10&amp;search=7890A"><strong>Agilent 7890A Gas Chromatograph (GC)</strong></a> and an <a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/library?mainauthorItems=1-10&amp;search=5975C"><strong>Agilent 5975C inert XL Mass Spectrometer (MS)</strong></a>. The column selected for this analysis was a Restek Rxi®-624 Sil MS, with dimensions of 30m x 0.25mm I.D. x 1.4µm film thickness. Experimental parameters used for this analysis are listed in Tables 1 and 2.</p><h4><strong>Conclusions:&nbsp;</strong></h4><p>The system produced excellent results. The curve and the compound response factors met all of the method requirements. The overall precision was less than 5% RSD while the system showed an average recovery of 94%. When examining the expected analyte concentration to the extracted sand results, it was found that the average recovery was approximately 102%. Thus, the automated extraction performed extremely well. When comparing the three different matrices it was found that they all displayed similar recoveries, however the sand matrix did perform the best of the three as expected since sand tends not to absorb analytes as readily as other matrices. Finally, the ability to control the needle depth on extraction samples was a great benefit for the different matrices as the system exhibited no issues with needle clogging due to the higher needle depth when performing the potting soil extractions. As demonstrated from this study, the Centurion WS automated extraction capability would be an asset to any lab performing extractions.</p><h3><strong>3. Shimadzu: Fatty Acid Analysis of Edible Oils by GC</strong></h3><p><strong>Comparing Helium and Hydrogen as Carrier Gases</strong></p><p><strong>Comparing Analysis by GC with a Simple Screening Analysis by LC-MS</strong></p><ul><li>Application note</li><li><a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/labrulez-bucket-strapi-h3hsga3/an_01_00852_en_e928ab40ea.pdf"><strong>Full PDF for download</strong></a></li></ul><p>There are a variety of edible oils that are sold commercially for a range of uses. They are almost entirely composed of compounds called triacylglycerols (neutral lipids), which consist of three fatty acids bound to a glycerol molecule. Because fatty acids affect the functional characteristics of food, determining the fatty acid composition of food is an important area of analysis. In this Application News, the Brevis GC-2050 (GC-FID) is used to determine the fatty acid composition of commercially available edible oils, and the use of hydrogen as a carrier gas is examined and compared with helium. This Application News also analyzes the same edible oils analyzed by LC-MS in a previous Application News1) and comparesthe results.</p><h4><strong>Equipment&nbsp;</strong></h4><p>GC-FID analysis was performed using the <a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/library?mainauthorItems=1&amp;search=Brevis+GC-2050"><strong>Brevis GC-2050</strong></a> gas chromatograph (Fig.1) , which is designed to be highly compact, with an installation footprint 35 % smaller than the previous model. The Brevis GC-2050 is also equipped with a carrier gas saving mode that reduces carrier gas consumption. The carrier gas saving mode reduced the use of helium carrier gas by around 89 % and hydrogen carrier gas by around 79 % in the analyses described in this article. Hydrogen carrier gas also reduced analysis times by around 25 %.</p><h4><strong>Results from Real-World Sample Analysis&nbsp;</strong></h4><p>Edible oils were derivatized and analyzed using both helium and hydrogen carrier gases. Peaks that could not be identified with the calibration standard (37 FAME mixture) were analyzed by GC-MS to determine their carbon number and degree of unsaturation. (Labeled as isomer.) Fig. 4 shows the chromatograms (partial) obtained from analyzing linseed oil with helium and hydrogen carrier gases. Similar separation was achieved with both gases.</p><h4><strong>Comparing GC-FID and FIA-MS&nbsp;</strong></h4><p>Tables 5 and 6 compare the results of analyzing eight vegetable oils for fatty acids by FIA-MS (screening analysis) and GC-FID (a helium carrier). The results reveal characteristic features of the vegetable oils, such as the most abundant fatty acids, and that coconut oil contains fatty acids with relatively low carbon numbers. More information about the screening analysis performed with a single quadrupole mass spectrometer can be found in Shimadzu Application News 01-00674-EN. <sup>1)</sup></p><h4><strong>Conclusion&nbsp;</strong></h4><p>In this Application News, the Brevis GC-2050 was used to determine the fatty acid composition of edible oils. Fatty acid analysis is typically performed using helium as the carrier gas, but in this study, hydrogen was used. This reduced analysis times while producing results that compared favorably with helium. Given the current supply issues associated with helium, hydrogen should be considered as an alternative to helium.&nbsp;</p><p>The results also show that fatty acid compositions determined by FIA-MS correlate well with results obtained by GC-FID. And because the sample pretreatment only requires sample dilution, analysis by FIA-MS is rapid, taking just 1 minute. Therefore, FIAMS seems particularly well-suited to the screening of large numbers of samples or when there is an urgent need to verify quality or safety</p>

News from LabRulezGCMS Library - Week 46, 2025

<p><strong>Our Library never stops expanding. What are the most recent contributions to LabRulezLCMS Library in the week of 10th November 2025? Check out new documents from the field of liquid phase, especially HPLC and LC/MS techniques!</strong></p><blockquote><p><span style="font-size:20px;">👉 </span><a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/library"><span style="font-size:20px;"><strong>SEARCH THE LARGEST REPOSITORY OF DOCUMENTS ABOUT LCMS AND RELATED TECHNIQUES</strong></span></a></p></blockquote><blockquote><p><strong>👉 Need info about different analytical techniques?</strong> Peek into <a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/library"><strong>LabRulezGCMS</strong></a> or <a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/library"><strong>LabRulezICPMS</strong></a> libraries.</p></blockquote><p>This week we bring you application notes by <strong>Agilent Technologies,</strong> <strong>Shimadzu </strong>and<strong> Waters Corporation</strong> and poster by <strong>Thermo Fisher Scientific!</strong></p><h3><strong>1. Agilent Technologies: Feed Injection at Elevated Pressure Using the Agilent 1290 Infinity III Hybrid Multisampler</strong></h3><p><strong>Optimization of a multipesticide method for the highest sensitivity through feed injection</strong></p><ul><li>Application note</li><li><a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/labrulez-bucket-strapi-h3hsga3/te_feed_injection_multipesticide_1290_infinityiii_hybrid_5994_8478en_agilent_f070801ff2.pdf"><strong>Full PDF for download</strong></a></li></ul><p>Modern analytical methods for the determination of pesticide residues are based on multipesticide methods capable of determining hundreds of pesticides in a sample in one analytical LC/MS/MS run. For chromatographic separation of these pesticides, modern separation columns are used. Their dimensions are typically 2.1 × 150 mm, filled with 1.9&nbsp;µm particle size material. This requires that the LC can work at high pressures up to 1300 bar. The Agilent 1290 Infinity III Hybrid Multisampler can operate within this pressure range. In addition, the Hybrid Multisampler can work in two different modes, the classic flow through mode and the Agilent Feed Injection mode. Feed Injection mode helps to prevent peak broadening and splitting effects as they can occur with the classic flow through mode for injection of samples in solvents with high elution strength and higher injection volumes.</p><h4><strong>Experimental</strong></h4><h5><strong>Instrumentation</strong></h5><ul><li>Agilent 1290 Infinity III High-Speed Pump (G7120A)&nbsp;</li><li>Agilent 1290 Infinity III Hybrid Multisampler (G7137B)&nbsp;</li><li>Agilent 1290 Infinity III MCT (G7116B)&nbsp;</li><li><a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/library?mainauthorItems=10&amp;search=Ultivo+Triple+Quadrupole+LC%2FMS+"><strong>Agilent Ultivo Triple Quadrupole LC/MS </strong></a>with Agilent Jet Stream source&nbsp;</li></ul><h5><strong>Software&nbsp;</strong></h5><ul><li><a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/library?mainauthorItems=10&amp;search=MassHunter+Acquisition+Software"><strong>Agilent MassHunter Acquisition Software</strong></a> (v. 12.2)&nbsp;</li><li><a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/library?mainauthorItems=10&amp;search=MassHunter+Qualitative+Analysis"><strong>Agilent MassHunter Qualitative Analysis Software</strong></a> (v. 12.0)&nbsp;</li><li><a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/library?mainauthorItems=10&amp;search=MassHunter+Quantitative+Analysis"><strong>Agilent MassHunter Quantitative Analysis Software</strong></a> (v.&nbsp;12.1)&nbsp;</li></ul><h5><strong>Column&nbsp;</strong></h5><ul><li><a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/library?mainauthorItems=10&amp;search=InfinityLab+Poroshell+120+Phenyl-Hexyl"><strong>Agilent InfinityLab Poroshell 120 Phenyl-Hexyl</strong></a>, 2.1 × 150 mm, 1.9 µm (part number 699675-912)</li></ul><h4><strong>Results and discussion&nbsp;</strong></h4><p>Calibration curves for a multipesticide method were acquired to demonstrate the possible improvement of peak shape and the lower limits of quantification (LOQ) using Agilent Feed Injection mode in comparison to classical flow through injection mode. This method comprised approximately 120&nbsp;pesticide compounds measured by dynamic MRM. The separation was performed on a 150 mm length column. With the chosen solvents and flow rate, a pressure range above 1000&nbsp;bar was necessary. The calibration curves were acquired for concentrations down to 0.02 ppb (20 ppt), and each calibration point was measured three-fold. The concentrations of the calibration solutions were prepared by dilution using the strong-eluting solvent acetonitrile and injected directly by both injection modes with different injection volumes. An example chromatogram showing the elution pattern for the MRM transitions is displayed in Figure 1.</p><h4><strong>Conclusion&nbsp;</strong></h4><p>This technical overview demonstrates the use of the Agilent Feed Injection mode available with the Agilent 1290 Infinity III Hybrid Multisampler in comparison to the classical flow through injection mode for the analysis of pesticides by a multipesticide method. We demonstrated that the use of Agilent Feed Injection mode improves the obtained peak shape for injection of samples dissolved in high elution strength solvent compared to classical flow through mode. With the improved peak shape obtained by Feed Injection mode, signal to noise ratios were improved, resulting in higher sensitivity. Due to retained peak shape, no manual interaction for peak integration was necessary when using feed injection.</p><h3><strong>2. Shimadzu: Automatic Optimization of Sample Solvent Composition for Achieving Sharp Peak Shapes</strong></h3><ul><li>Application note</li><li><a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/labrulez-bucket-strapi-h3hsga3/an_01_00938_en_c0f4de1265.pdf"><strong>Full PDF for download</strong></a></li></ul><h4><strong>User Benefits</strong></h4><ul><li>The automatic pretreatment function integrated into the autosampler enables efficient optimization of sample solvent composition, which can be automatically adjusted during analysis.</li><li>The desired composition of sample solvent can be easily specified via the LabSolutionsTM MD interface.</li></ul><p>In LC analysis, the composition of the sample solvent is critical for achieving proper peak shape. If the sample solvent is a stronger eluting solvent than the mobile phase, sample band condensation at the column inlet may be insufficient, leading to sample band broadening. For instance, increasing the organic solvent ratio in the sample solvent to dissolve low-polar compounds may deteriorate the peak shapes of early-eluting compounds in reversed-phase chromatography. Therefore, determining the optimal ratio of organic solvent in the sample solvent is essential. However, manually preparing multiple solvent compositions is extremely time-consuming. The automatic pretreatment function of the autosamplers (<a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/library?mainauthorItems=1&amp;search=Nexera+X3"><strong>Nexera series</strong></a>), in combination with the method development support <a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/library?mainauthorItems=1&amp;search=LabSolutions+MD"><strong>software LabSolutions MD</strong></a>, enables consecutive analyses using different sample solvent compositions without manual intervention. This allows evaluation of the effect of sample solvent composition on peak shape while significantly reducing the labor involved in optimization. In this study, we demonstrate the automated determination of the optimal sample solvent composition using metoclopramide, a small-molecule drug, as a model compound.</p><h4><strong>Automatic Pretreatment Function</strong></h4><p>The automatic pretreatment function integrated into the autosampler enables drawing and ejecting specified volumes of reagents and solvents from any vial, as well as mixing them within the needle. As an example, Fig. 1 illustrates the procedure for automatically adjusting the water-to-methanol ratio in the sample solvent using this function. The autosamplers (Nexera series) supports up to three rinsing solvents via the multi-rinse function, and in this procedure, methanol and water were supplied from these rinsing lines. By modifying the "methanol eject volume" (2) and “water eject volume” (3) in Fig. 1, sample solvents with desired methanol-to-water ratios can be automatically prepared. In addition, adjusting the “sample drawing volume” (1) allows for not only changing the sample solvent composition but also diluting the sample solution to a specified concentration.</p><h4><strong>Analytical Conditions and Target Compounds</strong></h4><p>A 1000 mg/L solution of metoclopramide, a small-molecule drug, was prepared in 100% methanol as a model sample. The water content in the sample solvent was then varied from 0% to 90% in 10% increments (A 10-fold dilution was applied during automatic sample solvent preparation), and its effect on peak shape was evaluated under the analytical conditions shown in Table 1. By simply specifying the desired water content on the LabSolutions MD interface (red frame in Fig. 2), the autosampler’s automatic pretreatment function adjusts the sample solvent composition during consecutive analyses. This eliminates the need for manual preparation of multiple solvent mixtures, significantly reducing the workload involved in optimizing sample solvent composition for ideal peak shapes.</p><h4><strong>Conclusion</strong></h4><p>Optimizing the composition of the sample solvent is essential for achieving appropriate peak shapes. However, manual preparation of multiple solvent compositions is time-consuming. The automatic pretreatment function of the autosampler, in combination with LabSolutions MD, enables consecutive analyses with automatic variation of the sample solvent composition. This significantly reduces the effort required for optimization. Since the optimal sample solvent composition depends on both the physicochemical properties of the analyte and the mobile phase conditions, optimization is necessary for each sample. These tasks, however, can be greatly reduced by utilizing the automatic pretreatment function.</p><h3><strong>3. Thermo Fisher Scientific: Improving selectivity and sensitivity of lipid mediator analyses by coupling nano-flow chromatography with the Stellar mass spectrometer</strong></h3><ul><li>Poster</li><li><a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/labrulez-bucket-strapi-h3hsga3/po_improving_selectivity_sensitivity_lipid_mediator_analyses_po_en_c38bc37825.pdf"><strong>Full PDF for download</strong></a></li></ul><p>Lipid mediators play crucial roles in regulating inflammation and maintaining tissue homeostasis. However, their quantification in biological samples is difficult due to low concentrations (ppt–ppb range), chemical instability, and structural similarity. Conventional LC-MS/MS methods using high-flow UHPLC and triple quadrupole mass spectrometers require extensive optimization of SRM transitions for each analyte. This study introduces a <strong>nano-flow LC-MS workflow</strong> combining the <strong>Thermo Scientific Vanquish Neo UHPLC system</strong> with the <strong>Thermo Scientific Stellar mass spectrometer</strong>, aiming to improve analytical sensitivity and selectivity while reducing solvent and sample consumption.</p><h4><strong>Experimental</strong></h4><p>Lipid mediator standards (from Cayman Chemical) were analyzed using two chromatographic configurations: a <strong>nano-flow method</strong> (500 nL/min) with the <a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/products/398"><strong>Vanquish Neo UHPLC</strong></a> and a <strong>high-flow method</strong> (300 µL/min) using the <a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/products/744"><strong>Vanquish Horizon UHPLC</strong></a>. Both setups were coupled either to the <a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/products/1149"><strong>Stellar MS</strong></a> or the <a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/products/404"><strong>TSQ Altis Plus triple quadrupole MS</strong></a>. The Stellar instrument features a <strong>dual-pressure linear ion trap</strong> and <strong>ion routing multipole</strong>, enabling both <strong>HCD (higher-energy collisional dissociation)</strong> and <strong>CID (collision-induced dissociation)</strong> fragmentation. Parallel reaction monitoring (PRM) was employed instead of SRM, allowing simultaneous detection of multiple transitions. Data were processed using <a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/products/77"><strong>Thermo Scientific TraceFinder</strong></a> software with internal standards and calibration curves ranging from 0.0001 ppb to 100 ppb.</p><h4><strong>Results</strong></h4><p>The nano-flow Stellar method achieved superior sensitivity and selectivity compared with the high-flow methods on both Stellar and TSQ Altis Plus systems. Limits of quantitation (LOQ) reached the <strong>low-ppt range</strong>, while maintaining fast analysis times (&lt; 30 min) and requiring less than 20 µL of solvent per sample. Chromatograms of key eicosanoids such as <strong>15(S)-HETE</strong>, <strong>12(S)-HETE</strong>, and <strong>5(S)-HETE</strong> demonstrated higher signal intensity and improved peak shapes under nano-flow conditions. Calibration curve reproducibility and scan density (&gt; 10 scans per peak) confirmed reliable quantitative performance.</p><h4><strong>Conclusion</strong></h4><p>Coupling <strong>nano-flow chromatography</strong> with the <strong>Stellar mass spectrometer</strong> provides a powerful workflow for targeted lipid mediator analysis, significantly enhancing both selectivity and sensitivity compared with conventional high-flow LC-MS/MS. The system’s <strong>PRM capability</strong>, <strong>dual-fragmentation flexibility</strong>, and <strong>low-volume solvent use</strong> make it a robust and cost-effective solution for biological and clinical lipidomics, capable of quantifying trace-level lipid mediators efficiently and reproducibly.</p><h3><strong>4. Waters Corporation: Investigating Drug Metabolism of Methapyrilene Within a Rat Model Using a Data Dependent Acquisition Workflow with the Xevo MRT Mass Spectrometer</strong></h3><ul><li>Application note</li><li><a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/labrulez-bucket-strapi-h3hsga3/720009001_en_c11ab3b6b7.pdf"><strong>Full PDF for download</strong></a></li></ul><h5><strong>Benefits&nbsp;</strong></h5><ul><li>Demonstration of the Waters™ Xevo™ MRT Mass Spectrometer (MS) workflow for the analysis of urine extracts from a drug dosed study, involving methapyrilene.</li><li>Data dependent acquisition (DDA) has been used for data collection, providing highly informative fragmentation data to confidently identify drug metabolites of interest.</li><li>Combining a DDA approach with high-throughput chromatography is shown to consistently yield high quality spectra, providing highly confident compound identifications.</li><li>A seamless workflow allowing drug metabolites to be confidently identified is demonstrated with the UNIFI™ Application within the waters_connect™ Software Platform</li></ul><p>The introduction of the Xevo MRT Mass Spectrometer allows for comprehensive drug metabolite identification (Met ID) at high acquisition speed. Using urine samples collected over a time course of six days, the excellent mass accuracy, high mass resolution, and sensitivity are highlighted, which can be achieved for drug metabolism studies. DDA provides highly specific MS/MS information, which assists with structural elucidation. The speed at which DDA data can be acquired with the Xevo MRT Mass Spectrometer can be as fast as 50 and 100 Hz, MS, and MS/MS respectively. Combined with fast chromatographic methods, this fast data acquisition rate allows for highly informative, confident data in a high-throughput fashion</p><h4><strong>Experimental</strong></h4><p>LC-MS Data Acquisition LC-MS data were collected using an <a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/products/191"><strong>ACQUITY™ Premier UPLC™ System</strong></a> coupled to a <a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/products/1148"><strong>Xevo MRT Mass Spectrometer</strong></a>. The reversed-phase (RP) chromatographic separation consisted of a 5.0 minute method (injection to injection) using a <a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/products/1966"><strong>CORTECS™ C18</strong></a>, 1.6 µm, 2.1 x 50 mm analytical Column (p/n: 186007114). The LC solvents were comprised of mobile phase A (0.1% formic acid containing 1 mMol ammonium formate) and mobile phase B (95:5 ACN:Water (v/v), 0.1% formic acid, 1 mMol ammonium formate) being ramped from 50% to 99% over 5 minutes using a flow rate of 0.6 mL/minute. The gradient started from 0.1% to 15% (mobile phase B) over 1.5 minutes, 50% at 3 minutes and 99% at 4 minutes. The solvent composition was held at 99% (mobile phase B) for 0.5 minutes and re-equilibration at initial conditions by 5 minutes, ready for the subsequent injection.&nbsp;</p><p>The Xevo MRT Mass Spectrometer was configured with the source settings as outlined in Table 1. MS data were collected using DDA mode of operation, which consisted of scan rates of 20 Hz (MS) and 50 Hz (MS/MS). The number of components selected for MS/MS were eight with a dynamic exclude applied of 10 mDa with a 10 second retention time tolerance.</p><h4><strong>Data Processing&nbsp;</strong></h4><p>The acquired data were processed using the UNIFI Application within the <a target="_blank" rel="noopener noreferrer" href="https://lcms.labrulez.com/products/1544"><strong>waters_connect Software Platform</strong></a>. Data were peak picked and screened against a compound database containing MP metabolites and their associated fragments. A mass tolerance of 1 ppm for both MS and MS/MS were applied.</p><h4><strong>Conclusion&nbsp;</strong></h4><p>LC-MS analysis of urine collected over a time course following administration of the drug methapyrilene, has been demonstrated using a DDA approach with the Xevo MRT Mass Spectrometer. MP undergoes complex biotransformation to provide a variety of metabolites. Utilizing a DDA workflow provides detailed, clean fragment ion spectra for confident structural elucidation. The additional benefit of sub ppm mass accuracy provides definitive identification(s). Integrating fast chromatography allows for high-throughput analyses while maintaining high resolution and mass accuracy.</p>

News from LabRulezLCMS Library - Week 46, 2025

News from LabRulezLCMS Library - Week 05, 2026

Article

Product

Events

Webinars

Application

Academy

Video

Poster

Scientists

Plastics

Environment

Food

Water

Health

Presentation

Scientific article

Interview

Toxicology

Popularization

Science and research

Software

Covid-19

Career

Laboratories

Various

Zaměření

Type of News

Focus

Everything from the world of analytical chemistry in one place. We connect people in solving their problems. At Labrulez you will find all the necessary information easily, quickly and clearly. Stop searching and start finding.

LabRulez

Restek at ISC 2026

Thermo Fisher Scientific at ISC 2026

Waters at ISC 2026

Managing 4D-STEM data with smarter acquisition

Spatial Proteomics for Translational Research

Streamlining Endotoxin Testing: Automated Sample Preparation and Audit-Ready Workflows for QC Laboratories