timsplot: A Python Shiny App for Visualizing timsTOF Proteomics Results

ASMS 2022 – ThP 454 Enhanced Sensitivity and Reproducibility for HLA-Class I & II Immunopeptidomics Utilizing dia-PASEF Workflow Diego M Assis1; Nicholas Cheung2; Jonathan R Krieger3; Daniel Hornburg4; Michael Krawitzky4; Matthew Willetts5; Robert Salzler2 1Bruker Scientific LLC, Billerica, MA; 2Regeneron,…

dia-PASEF Visualization Tool: a shiny App for data visualization and exploration of dia-PASEF data USHUPO 2024 Sebastian Vaca1, Christopher Adams2, Matthew Willetts3, Shourjo Ghose3 1BioNTech US, Cambridge, MA, USA 2Rezo Therapeutics, San Francisco, CA, USA 3Bruker Daltonics Inc., Billerica, MA,…

US HUPO 2024 Ultra-high sensitive Single Cell Proteomics on the timsTOF Ultra A Shourjo Ghose1, Christoph Krisp2, Anjali Seth3, David Hartlmayr3, Guilhem Tourniaire3, Léo Laboubi4, Markus Lubeck2 and Gary Kruppa5 C Autosampler needle dried peptides 1 Bruker Scientific LLC., Billerica,…

US HUPO 2024, ABSTRACT 641 TIMSrescore: timsTOF-optimized PSM rescoring boosts identification rates for immunopeptidomics Dennis Trede1, Arthur Declercqi2, Ralf Gabriels2, Robbin Bouwmeester2, Jonathan Krieger3, Tharan Srikumar3, Sven Degroeve2 and Lennart Martens2 1Bruker Daltonik GmbH, Fahrenheitstraße 4, 28359 Bremen, Germany 2VIB-UGent…